Science in the Qur’an?
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0. IntroductionI admit it wasn’t originally my intention to write this article. I was nearly forced to write it. The reason is that, earlier, I wrote a few more articles on the religion of Islam (here), which were read — among other people — by Muslims. Some of my Muslim readers wrote to me, and in the ensuing discussion many of them made a well known claim, which is one usually made exclusively by Muslims: that, supposedly, there are scientific facts revealed in the Qur’an, which have been discovered by scientists in recent times only; therefore this proves the divine origin of the Qur’an and the truth of their religion. Their claims vary, and include such statements as that Muhammad couldn’t have known such-and-such scientific facts in his time, or that the Qur’an contains no statements that conflict with modern science. Since my Muslim readers make such claims often, I resorted to writing this article so that by referring them to it I minimize the time needed to reply to each one of them individually. I would like to start by pointing out that those Muslims who make the above claims violate the deepest and strongest foundational pillar of science; specifically, this one:
What Muslims do is the opposite: they have the “theory” that their Qur’an is Allah’s direct word (which was revealed and passed on to Muhammad’s mind, then dictated by him and written in the Qur’an), and then they try to find the data that — they think — support their theory. That’s an entirely unscientific endeavor. By doing so they show that they don’t understand science, the subject that they try to subjugate under their religious yoke. In what follows I prefer to use the second person and talk directly to my Muslim readers, for whom, after all, this article was written. So, my dear Muslim reader: You adopt, as I just said, the wholly unscientific approach of trying to find data (verses in your Qur’an) that support your theory (that Allah is the author of your Qur’an). If you want to show that you’re not scientifically illiterate, and that you understand what you’re doing, I suggest that you follow the scientifically correct approach of first looking at the data (your Qur’anic verses) and then trying to see which theory best explains those data: theory #1, according to which Allah is the author of the Qur’an, or theory #2, according to which the author of the Qur’an is Muhammad, who produced the Qur’an out of his own mind, without Allah’s guidance. So I invite you to do this exercise with me: let’s examine together the data, and see which of the two theories explains them best. But I must warn you that if you want to have a scientific attitude (because science is our focus of discussion, right?) then you must be objective. To be objective means that you must not assume from the outset the thing that you are trying to prove, which is that Allah is the author of the Qur’an. It means that you must assume, even temporarily only, that you don’t know who the author of the Qur’an is, and that you try to find this out from what the Qur’an says, and from what we know today about Muhammad, and about the world that surrounds us. Can you do that? If you can, then you will be objective and your conclusion will be scientific. But I believe you can’t do it, because assuming — even for a second — that you don’t know who the author of the Qur’an is would be a sin for you. So if you really cannot, then please, do me a favor and go back to your prayers, without wasting my time and without trying to discover science in your Qur’an, because in that case you show very clearly that you don’t know what science is. However, if you agree with the scientific principle of objectivity, which means that we must not assume beforehand as true the thing we are trying to prove, but we must temporarily suspend our beliefs, must look at the evidence — the data — first, and on the basis of the evidence decide which theory explains it best, then let’s examine together some of the data in the Qur’an. Specifically, I would like us to examine the truth of the following idea first:
We’ll examine the above idea in the context of cosmology (how the world was made):
After that, we’ll examine some of the other claims made by my Muslim readers:
The above is like a table of contents of this page, so that clicking on those links you move directly to the topic. But I suggest that you read this text sequentially, because once I introduce some idea I might refer to it later, so the topics that follow are not self-contained. |
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Qur’an: the Earth was
the first object that Allah created; the heaven was formed
later. |
That sounds like a blatant difference of opinions, doesn’t it? But there is more.
The second problem concerns the durations reported in the Qur’an. They conflict with modern scientific knowledge both absolutely and relatively. First, here’s what the absolute conflict is:
The Qur’an tells us that Allah created the world in six days (in several verses, and I said I am not going to argue that the verses in 41:9-12 describe a creation in eight days). The Jewish Bible has essentially the same duration of six days in its creation story (and the Bible is much older than the Qur’an, a datum that’s merely pointed out here), but the difference is that the Bible doesn’t explain what it means when it says “day”. (Of course, the simplest interpretation is that it means literally one period of time during which the sky is bright, because the Bible exhibits the same dissociation between the notion of “day” and the Sun as that of the author of the Qur’an, which was pointed out in §1.5.2; but let’s be generous and assume that a “day” is not just that, otherwise the two “holy books”, Qur’an and Bible, drop to the level of comics books for children.) Contrary to the Bible, in the Qur’an Allah attempts to tell to Muhammad how long an “Allah’s day” lasts, although Allah gives two different estimates. In verses 22:47 and 32:5 Allah says that a “day” for him is like 1000 years for people:
22:47 “And they ask you to hasten on the punishment, and Allah will by no means fail in His promise, and surely a day with your Lord is as a thousand years of what you number.”
32:5 “He regulates the affair from the heaven to the earth; then shall it ascend to Him in a day the measure of which is a thousand years of what you count.”
Notice that although 32:5 talks about a specific day, in contrast, 22:47 talks about “Allah’s day” in the abstract. So, from 22:47 we may conclude that when Allah says “day” in general he means a span of 1000 years. However, in verse 70:4 Allah muddles the issue a bit, as he talks about a specific type of day (the day it takes for angels and the spirit to ascend to him), which is equal to 50,000 years for people:
70:4 “To Him ascend the angels and the Spirit in a day the measure of which is fifty thousand years.”
There is no other verse in the Qur’an that tells us how long an “Allah’s day” is besides the verses listed above.
The problem is that even if we take the longer duration of 50,000 years for a day, then six days will add up to no more than 300,000 years. Of those, 4 x 50,000 = 200,000 years should be the time that Allah was creating the Earth and placing mountains on it. That, as an absolute number, is almost nothing compared to the around 4,500,000,000 years, which is the scientific estimate of Earth’s age. Given that mountains keep forming (they always do, they never stopped being formed), we should compare this large number, 4,500,000,000, against Qur’an’s 200,000 to see the magnitude of error. But even if we want to be generous and consider the initial period of Earth’s formation (without mountains, when the Earth’s surface was mainly molten rock), we still end up with an egregious error, comparing Qur’an’s 2 x 50,000 = 100,000 against around 500,000,000 in reality. And of course, if we consider the entire duration of the creation, then we must compare the Qur’an’s 300,000 against 13,700,000,000 years in reality. I will not even mention how ridiculous the Qur’an sounds if an “Allah’s day” is only 1,000 years (as 22:47 tells us), instead of 50,000. That’s called a “reality check” for the Qur’an, in absolute numbers.
But also in relative numbers, the conflict with science is not much easier to swallow. Whereas in the Qur’an the ratio of the creation of the Earth to the creation of the entire world (Earth and everything else) is 4 days / 6 days, i.e., 2/3, or ~0.666, the true (scientific) value of the same ratio is the following number: 4,500,000,000 / 13,700,000,000 = ~0.328. That’s not even half of the Qur’anic ~0.666. Notice that this error — the relative one — is independent of how long a Qur’anic “day” is.
Given all the above data, we may now consider the following two theories (to explain the data):
Allah, the true author of the Qur’an, claims that the Earth was created first and the heaven later, or at best concurrently with the Earth, but certainly not before it; whereas scientifically we know that the rest of the world existed for around 9 billion years before the Earth started being formed. Allah tells us that it took him at most 200,000 years to complete the creation of the Earth, and at most 300,000 for the entire universe, whereas science tells us that the corresponding numbers are 4,500,000,000 and 13,700,000,000. Finally, Allah tells us that the ratio of earth-to-universe creation is ~0,666, whereas science tells us that the same ratio is ~0.328. Allah, although infinitely wise (and therefore knowing about all these discrepancies with reality and errors in magnitudes), stated things as above for no reason at all, because even the Bedouins of Muhammad’s time couldn’t disagree on the basis of some numbers, since they had no personal opinion of any numbers involved in the creation of the world.
Muhammad, the true author of the Qur’an, and without divine inspiration, claims all the above, which — quite expectedly — conflict with everything we know from modern science today.
Which of the two theories seems more plausible, dear Muslim reader? We must take into account that Allah is assumed to be infinitely wise, whereas Muhammad was illiterate. Regarding cosmology, Muhammad had the knowledge of his fellow ancient Arabs, who had some traditional beliefs that circulated in that region of the world, and which included the Jewish belief of a creation in six days. Given an infinitely wise mind on one hand, and an illiterate and uninspired one on the other hand, from which of the two minds would you expect such factual errors?
Notice also that, no matter who the true author of the Qur’an is, the above errors exist anyway. Trying to explain them away with various arbitrary assumptions implies employing the unscientific attitude of first believing a theory as true, and then twisting the data and inventing new and arbitrary data in order to support the theory that you love so much. If you do that don’t bother talking about science please, because you don’t understand what it is.
To explain why the creation is reported in total disorder and disagreement with modern knowledge, theory #1 asserts that Allah was trying to please the Bedouins of Muhammad’s time. But would the oh-so-sensitive-in-cosmology ancient Bedouin feel disbelief against Muhammad if the Qur’an had said that stars were created before the Earth, that the creation lasted for as many “days” as are needed to agree with reality (i.e., current knowledge), and that the ratio of the duration of the creation of the Earth to the creation of the universe (“heaven”) was like ~1:3? What could go wrong with the Bedouins’ reaction to Muhammad, since they had already accepted such an incredible idea as that Muhammad was directly communicating with God? How can you be so sophisticated as to reject a revelation because of some numbers (which are just numbers anyway), and at the same time to be such an exemplar of naïveness and gullibility as to believe a man who tells you to reject your other gods and believe him because he talks to the only God? You can’t be extra smart and extra stupid at the same time, can you? Something doesn’t compute in theory #1.
To explain the data that we have from verses of the Qur’an that concern cosmology, and those from scientific observations, we have the following two theories:
Allah is the author of the Qur’an, and what he says disagrees with modern knowledge because he wanted to please the ancient Bedouins (although most probably they couldn’t care less), disregarding the present-day conflict with scientific knowledge.
Muhammad is the author of the Qur’an, which he conceived of without divine inspiration, and what he says disagrees with modern knowledge because it reflects Muhammad’s knowledge of the world as it appeared to his uninformed mind.
If theory #1 is correct, then Allah surely enough succeeded in pleasing the illiterate Bedouins, but simultaneously succeeded in making young children of today “laugh their brains out” (as children say) with the stupidity and egregious errors of the Qur’anic “cosmology”.
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| Γαληνός (“De Semine”): | Qur’an, sura 23 |
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Πάλιν δ’ ἐπὶ τὴν πρώτην τοῦ ζῴου σύστασιν ἐπανάγωμεν τὸν λόγον· καὶ ὅπως γε ἡμῖν εὔτακτός τε ἅμα καὶ σαφὴς γίγνοιτο, διελώμεθα τέτταρσι χρόνοις τὴν σύμπασαν τῶν κυουμένων δημιουργίαν. πρῶτος μέν, ἐν ᾧ κατὰ τὰς ἀμβλώσεις τε καὶ κατὰ τὰς ἀνατομὰς ἡ τοῦ σπέρματος ἰδέα κρατεῖ. κατὰ τοῦτον τον χρόνον οὐδ’ Ἱπποκράτης ὁ πάντα θαυμάσιος ἤδη που κύημα καλεῖ τὴν τοῦ ζῴου σύστασιν, ἀλλ’, ὡς ἀρτίως ἠκούσαμεν ἐπὶ τῆς ἑκταίας ἐκπεσούσης, ἔτι γονήν. ἐπειδὰν δὲ πληρωθῇ μὲν τοῦ αἵματος, ἡ καρδία δὲ καὶ ὁ ἐγκέφαλος καὶ τὸ ἧπαρ ἀδιάρθρωτα μὲν ᾖ καὶ ἀμόρφωτα, πῆξιν δ’ ἤδη τινὰ καὶ μέγεθος ἀξιόλογον ἔχῃ, δεύτερος μὲν οὗτος ὁ χρόνος ἐστί, σαρκοειδὴς δὲ καὶ οὐκέτι γονοειδής ἐστιν ἡ ουσία τοῦ κυήματος. οὐκοῦν δὲ γονὴν ἔτι προσαγορεύοντα τον Ἱπποκράτην τοιαύτην ἰδέαν εὕροις ἄν, ἀλλ’, ὡς εἴρηται, κύημα. τρίτος ἐπὶ τῷδε χρόνος, ἡνίκα, ὡς εἴρηται, τὰς μὲν τρεῖς ἀρχὰς ἔστιν ἰδεῖν ἐναργῶς, ὑπογραφὴν δέ τινα καὶ οἷον σκιαγραφίαν ἁπάντων τῶν ἄλλων μορίων. ἐναργεστέραν μὲν γὰρ ὄψει τὴν περὶ τὰς τρεῖς ἀρχὰς διάπλασιν, ἀμυδροτέραν δὲ τὴν τῶν κατὰ τὴν γαστέραν μορίων, καὶ πολὺ δὴ τούτων ἔτι τὴν κατὰ τὰ κῶλα. ταῦτα γὰρ ὕστερον, ὡς Ἱπποκράτης ὠνόμαζεν, ὀζοῦται, τὴν πρὸς τοὺς κλάδους ἀναλογίαν ἐνδεικνύμενος τῇ προσηγορίᾳ. τέταρτος δ’ οὗτός ἐστι καὶ τελευταῖος χρόνος, ἡνίκα ἤδη τά τ’ ἐν τοῖς κώλοις ἅπαντα διήρθρωται, καὶ οὐδ’ ἔμβρυον ἔτι μόνον, ἀλλ’ ἤδη καὶ παιδίον ὀνομάζει το κυούμενον ὁ θαυμάσιος Ἱπποκράτης, ὅτε καὶ ἀσκαρίζειν καὶ κινεῖσθαί φησιν, ὡς ζῴον ἤδη τέλειον. |
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| Galen (translation: author) | Author of the Qur’an (transl.: Pickthal): |
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But let us talk again about the beginning of the formation of the living being; and so as to make the account both orderly and clear, we will divide the whole creation of the fetuses into four stages. The first stage is when, as seen in abortions and dissections, the form of the sperm prevails. At that stage, not even Hippocrates, the all-wonderful, does call the constitution of the living being a fetus, but, as we recently heard in the case of abortion on the sixth day, [he] still [calls it] semen. But when it is filled with blood, the heart and the brain and the liver are still unarticulated and unformed, yet they have some solidity and considerable size; that is the second stage, during which the substance of the fetus is flesh-like and no more semen-like. Hence, you will not find Hippocrates calling the form “semen” anymore, but, as mentioned, a “fetus”. The third stage follows those, as was said, when it is possible to see the three main parts clearly, a kind of outline, and some sort of silhouette of all the other parts. You will see the formation of the three ruling parts clearly, that of the parts of the belly more dimly, and even more [dimly] than those [you will see the formation] of the limbs. For, later those form “twigs”, as Hippocrates called them, wanting to show their resemblance to branches. And the fourth and final stage is when all the parts of the limbs have been articulated, and the wonderful Hippocrates calls the fetus not just an embryo anymore, but already a child, when he says it jerks and moves, like a being already fully formed. |
13. Then placed him as a drop (of seed) in a safe
lodging; 14. Then fashioned We the drop a clot, then fashioned We the clot a little lump, then fashioned We the little lump bones, then clothed the bones with flesh, and then produced it as another creation. So blessed be Allah, the Best of creators! |
What I see is that both accounts divide the process of fetus formation into four stages. Qur’an’s stages are: (1) drop of seed (“nutfah”), (2) blood clot (“alaqa”), (3) little lump of flesh (“mudghah”), and (4) bones clothed with flesh (“another creation”). Galen’s stages are: (1) sperm form, (2) flesh-like with blood, (3) three main parts and a silhouette of the other parts, and (4) limbs (with bones) articulated, a fully formed child. There is another account of the “four stages” theory, given in verse 40:67 as follows: “He it is Who created you (1) from dust, then (2) from a drop (of seed) then (3) from a clot, then (4) bringeth you forth as a child,” Though the stages here differ, they remain four stages.
If two students of mine had given me the above texts in their exams, I would charge the one on the right for plagiarism and give him a big round zero (0) as a grade. His text sounds like a badly conceived summary, a caricature of the text on the left, which is more detailed, well thought-out, and well written. The author of the text on the left makes several references to his source (Hippocrates), which he names — as every scientific text should do — and even praises. In contrast, the author of the text on the right praises only himself (“So blessed be Allah, the Best of creators!”). What an immoral(*) show of bombastic arrogance! And what an enormous distance from what scientists today consider as morally correct scientific ethos!
Muslims make a lot of fuss about a certain medical doctor, Keith Moore, who, having been paid in the 1980’s by the Saudis in order to accept a position in an Arabic institution, claimed that modern embryology agrees with the four stages described in the Qur’an. Muslims speak of Moore as if he is the only scientist whose opinion matters. Never mind that there are thousands of other embryologists in the world, and that Moore himself rejected his early Islam-friendly opinions in a more recent book of his (after he returned to the West and stopped being paid in petro-dollars). What Muslims do not understand is that Moore’s earlier opinion did not support the Qur’an, but Galen, the ancient Greek doctor, who is the true author and originator of the idea of a four-stage embryonic development.
Interestingly, however, both Galen and — of course — the Qur’anic text that plagiarizes him are wrong regarding the first stage of the embryo. As every semi-literate person knows today, the first stage of the embryo is not the “form of the sperm” (or the “drop of seed” in Qur’anic parlance), but the woman’s fertilized ovum. Why do neither the Qur’an, nor of course its source, Galen, mention at all the woman’s ovum, which is just as important as the single sperm cell that fertilizes it?(*) Could it be because microscopes were developed only in the 17th century? But if Allah was the author of the Qur’an, he shouldn’t be hindered by the non-existence of microscopes! Don’t you agree? And don’t tell me again about those extra-sensitive Bedouins, because I’d accuse you of lower wit than even theirs. Would they really freak out if the Qur’an had said in 23:13 “Then We placed him as a pair of two seeds, from man and woman, in a safe lodging.” They didn’t freak out when Muhammad abolished their other gods; why should they do so upon hearing about “two seeds, from man and woman”? Don’t pretend to be dumb, my dear Muslim reader; you are intelligent, therefore you should be able to understand that Allah could talk in ways that would sound harmless to illiterate ancient Arabs, and at the same time make us unbelievers convert to Islam, because we would see immediately today that Muhammad’s information was revealed to him by a Higher Wisdom. Instead, the Qur’anic text is just as it should be if it were conceived of by an illiterate ancient Arab.
One question remains: if Muhammad plagiarized Galen, who lived four centuries before Muhammad, and since Muhammad was illiterate, how could Muhammad be aware of Galen’s theory of a four-stage embryonic development?
And yet, nothing remains a secret forever. In this page, the author of which is someone with the pen name of “Dr. Lactantius”, we read the following:
“[S]ome 26 books of Galen’s work were translated into Syriac as early as the sixth century AD by Sergios of Resh’ Aina (Ra’s al-Ain).[3] Sergios was a Christian priest who studied medicine in Alexandria and worked in Mesopotania, dying in Constantinople in about AD 532. He was one of a number of Nestorian (Syriac) Christians who translated the Greek medical corpus into Syriac. The Nestorians experienced persecution from the mainstream church and fled to Persia, where they brought their completed translations of the Greek physicians’ works and founded many schools of learning. The most famous of these by far was the great medical school of Jundishapur in what is now south-east Iran, founded in AD 555 by Anusharwan.
The major link between Islamic and Greek medicine must be sought in late Sasanian medicine, especially in the School of Jundishapur rather than that of Alexandria. At the time of the rise of Islam Jundishapur was at its prime. It was the most important medical centre of its time, combining the Greek, Indian and Iranian medical traditions in a cosmopolitan atmosphere which prepared the ground for Islamic medicine. The combining of different schools of medicine foreshadowed the synthesis that was to be achieved in later Islamic medicine.[4]
According to Muslim medical historians, including ibn Abi Usaybia and al-Qifti, the most celebrated early graduate of Jundishapur was a doctor named al Harith ibn Kalada.[5] Faced with the collection of Syriac manuscripts of Greek physicians which had recently been introduced to Jundishapur, it is inconceivable that he would not have been aware of Galen’s theories. Furthermore, al Harith was an older contemporary of Muhammed and became one of the Companions of the Prophet. We are told by Muslim historians that Muhammed actually sought medical advice from him[6], and his "teachings undoubtedly influenced the latter" [i.e., Muhammed].[7] Cyril Elgood writes:
"Such medical knowledge as Muhammed possessed, he may well have acquired from Haris bin Kalda [sic], an Arab, who is said to have left the desert for a while and gone to Jundishapur to study medicine ... On his return Haris settled in Mecca and became the foremost physician of the Arabs of the desert. Whether he ever embraced Islam is uncertain, but this did not prevent the Prophet from sending his sick friends to consult him."[8] ”
The numbers in square brackets refer to the sources of the above text, which the reader can examine after visiting the above-mentioned web page.
Whether the above is true or not, it certainly suggests a plausible way in which information from ancient Greek literature could have reached Muhammad, by way of hearsay, information which later Muhammad might have attributed to Allah, perhaps even genuinely believing that it comes from Allah, and not from his own mind. Yet that information is, as we saw, incomplete and inaccurate. Certainly it doesn’t look like the kind of “divine knowledge” that we’d expect from Allah.
So, given all the previous data, once again we have two theories to explain them:
Allah is the author of the above-mentioned verses. He described the development of the embryo in four stages, in a way which is suspiciously similar to that of the famous ancient Greek medical doctor Galen, perhaps because Allah also inspired Galen (?), who however was a pagan. Nonetheless, the four stages described in the Qur’an are wrong on several counts, most serious of which is that Allah neglects to mention the existence of the woman’s ovum. In general, Allah does not mention anything that requires a microscope to be seen, for reasons unknown and unexplained by this theory.
Muhammad is the author of the above-mentioned verses. He described the development of the embryo in four stages, plagiarizing the work of the ancient Greek medical doctor Galen, perhaps after having a hearsay acquaintance with it from doctors who had studied the ancient literature. Naturally, Muhammad’s four stages have errors, and do not mention anything that requires a microscope to be seen, for the obvious reason that the microscopes were developed only in the 17th century. This implies that Muhammad did not really receive information from Allah, but thought he received it.
As before, the question persists: given the evidence, and using your rational and objective judgment, which of the two theories appears more plausible to you?
Some verses of the Qur’an claim that all “fruits” of the earth, or living beings in general, exist in pairs: male and female. Some of those verses, although they obviously mean to talk about biological things (living beings) given the context in which they are embedded, are however so vague that — out of context — sound as if Allah is saying that all things (in the universe) come in pairs. Some Muslims grab the opportunity to claim that Allah must have meant things like matter & antimatter, pairs that have been discovered in quantum physics in the 20th century. This is a silly argument, logically argued against as follows: if Allah said “all things come in pairs” (without meaning all living beings, i.e., disregarding the context), then it should be all things; therefore it suffices to find one counter-example (something that does not belong to a pair) to invalidate the idea of “all things”. Indeed, as we’ll see, there are plenty of “things” in nature that do not belong to pairs. But even if we restrict the meaning to “all things biological”, i.e., all living beings, again we find that it’s not true that all living beings come in pairs of male and female. Let’s see the relevant verses (my emphasis):
13:3 “And He it is Who spread out the earth and placed therein firm hills and flowing streams, and of all fruits He placed therein two spouses (male and female). [...]”
36:34 “And We have placed
therein gardens of the date-palm and grapes, and We have caused springs
of water to gush forth therein,”
36:35 “That they may eat of the fruit
thereof, and their hands made it not. Will they not, then, give thanks?”
36:36 “Glory be to Him Who created all
the sexual pairs, of that which the earth groweth, and of
themselves, and of that which they know not!”
43:10 “Who made the earth a
resting-place for you, and placed roads for you therein, that haply ye
may find your way;”
43:11 “And Who sendeth down water from the
sky in (due) measure, and We revive a dead land therewith. Even so will
ye be brought forth;”
43:12 “He Who created all the pairs,
and appointed for you ships and cattle whereupon ye ride.”
51:48 “And the earth have We
laid out, how gracious is the Spreader (thereof)!”
51:49 “And all things We have created by
pairs, that haply ye may reflect.”
Now let’s examine each verse carefully.
Verse 13:3 talks explicitly about “fruits”. Now, if “fruits” is meant literally, i.e., apples, pears, peaches, bananas, kiwis, etc., then this verse is evidently wrong, because none of the fruits just mentioned is either male or female. (When you eat an apple, you eat an apple, not a “male apple” or a “female apple” — I hope that’s obvious and part of common knowledge.) And if “fruits” is used figuratively to mean “plants” (by a figure of speech called “synecdoche”, as when we say “brain” to mean “very intelligent person”), then verse 13 is wrong again, because there are some plants that are neither male nor female; they don’t multiply sexually, but asexually, through a biological process called “apomixis”. Some such plants are extremely common. One of them is the humble dandelion (see picture), which, being so widespread throughout the world, must have existed just under Muhammad’s nose — except that he couldn’t “sniff” the fact that that lowly plant would stand as evidence against his verse 3 of sura 13.

The humble dandelion, Qur’an’s asexual nightmare
So we see that no matter which way we interpret “fruits” in 13:3, we find that verse to be contradicting reality. Either Allah was sloppy when he said “all fruits” come in pairs of male and female — a sloppiness not befitting an all-wise being like Allah — or somebody who had a very superficial knowledge of nature came up with 13:3 (guess who).
Moving on to verses 36:34–36, we see that (34) Allah talks about creating gardens with date-palm fruits, grapes, and waters, (35) for people to eat and not toil to make, asking them to be thankful, (36) glorifying himself for having created all the sexual pairs, those that grow out of the earth, i.e., the plants. This of course logically does not imply that all plants are sexual. Then the phrase “and of themselves” has been interpreted as referring to people by some interpreters, or referring to animals by other interpreters, because the animals move by themselves (well, at least most of them, barring some aquatic species that really behave like plants). Then follows “and of that which they don’t know.” The pronoun “they” here must refer to people, who can be the only ones who don’t know. But the word “that” has been used by some Muslims as a reference to such exotic things as subatomic particles, matter and anti-matter, and so on. This is a completely arbitrary interpretation, because all the discussion (the context) from 36:34 up to this point was about things of the earth; why should Allah make suddenly a conceptual jump and talk about nuclear physics? The phrase would then be incoherent, and you wouldn’t want your Allah to think incoherently. The phrase “and of that which they don’t know” is called a blanket statement, which means that it’s so general and vague that it can cover anything that can be forced under it. Why should our minds go to nuclear physics and not to ideas much more accessible to Muhammad, such as that there are living beings that come in male–female pairs and which Muhammad didn’t know of? If I were in Muhammad’s position, thinking shrewdly, and knowing that I know next to nothing, I would think that there might be other living things besides those that I know, so I should cover that possibility with a blanket statement, so that my “revelation” does not become obsolete by later knowledge. Why is this explanation not as satisfying as the other one, if we don’t already have the theory that Allah is the originator of the Qur’an? Objectively, either of the two interpretations seems equally plausible. And, frankly, if Allah’s purpose was to persuade us, present-day unbelievers, why did he use such an ambiguous and vague phrase? “Extraordinary claims require extraordinary evidence”, says a dictum. To claim that “that which they don’t know” refers to nuclear physics is an extraordinary claim; the ambiguous phrase in 36:36 is anything but extraordinary evidence to support it.
An exactly parallel argumentation holds for verses 43:10–12: there is not enough evidence (let alone an extraordinary one) that the phrase “created all the pairs” refers to anything other than the male–female pairs that Muhammad could witness.
As for the verses of sura 51, although the context is again the earth (in 51:48), we read: “all things We have created by pairs” in 51:49. This is false no matter which way the word “things” is interpreted. If “things” refers to anything in the world, then there are many things that do not exist in pairs. I do not see the paired counterpart of the Grand Canyon, for example, or of hydrogen, gravity, Mars, Saturn, Sun, the real number π, the imaginary number i, the human feeling of sarcasm, and a host of other “things” that are one-of-a-kind. And if “things” refers to living beings, and therefore “pairs” refers to the male–female notion, then first, Allah is being sloppy in his language once again, saying “things” when he means “living beings”; and second, he is wrong, because there are plenty of living beings that do not come in pairs of male–female, such as the bacteria, many protists, fungi, and among animals, the rotifers — all of which are types of beings that escape the attention of someone who has only a superficial knowledge of the biological world.
As usual, two theories are available:
Allah, who is indeed the author of the Qur’an, chose to be sloppy in his language and/or wrong in his statements. Allah of course knows that neither “things” nor “beings” always come in pairs. He opted to say wrong or inaccurate things so that the average Bedouin would agree with him, but billions of non-Muslims today would find that Allah spoke like an illiterate person.
The author of the Qur’an is Muhammad (without divine guidance from Allah), and everything fits into place. Muhammad could very well be sloppy in his language, because he was only a human; and he could very well be wrong in what he said, because he talked only about things he could see with his bare eyes (lacking microscopes and lenses) and could not understand properly.
Which of the two theories makes better sense, explaining best the data?
Of importance is not only what the Qur’an talks about in the realm of biology, but also what it fails to talk about. What it omits is just as revealing as what it includes.
You see, if a knowledgeable individual examines the biological life of our planet today, he or she will be impressed more by what cannot be seen by the bare eye, rather than by what can be seen.
If we examined the living beings of Earth we should conclude that Earth is a planet inhabited primarily by bacteria, and on which some larger forms of life also exist.
The most stunning observation is that if we could put all the bacteria on one scale of a balance, and all other forms of life (animals, trees, etc.) on the other scale, then the balance would tip toward the side of the bacteria. The total mass of bacteria weighs more than all plants and animals put together!
The reason is that one gram of soil contains an average of 40,000,000 bacteria, and one milliliter of fresh water contains an average of 1,000,000 bacteria. The total number of bacteria of our planet is about 5 nonillion (5,000,000,000,000,000,000,000,000,000,000), forming a biomass that exceeds the biomass of all plants and animals (source).
But the Qur’an is completely mute regarding such stunning facts.
Why? Why isn’t the existence of bacteria even hinted
at by the author of the Qur’an?
Could it be because the author of the Qur’an couldn’t see them?
No!... That can’t be true! Right? Because if the author of the Qur’an couldn’t see the all-important bacteria of our planet, then he couldn’t have been Allah. He must have been Muhammad; Muhammad, the illiterate nomad, who didn’t have microscopes, and thus couldn’t ever know about what he couldn’t see!
Why doesn’t the Qur’an mention the DNA, this molecule
that turns out to be all-important in biology, and essentially
determines how life is on our planet? Don’t give me
again the dumb old argument about those extra-sensitive Bedouins,
because you’ll force me to come up with a verse that would sound
innocent to them, and yet reveal the DNA structure to us. I’ve done
similar things numerous times in this text so far, so you wouldn’t risk
insisting that I can’t do it again, would you? And I’m not even anywhere
near as wise as Allah. Surely Allah could do it a zillion times
better than me. So, tell me please, how can the Qur’an tell us
anything interesting about biology when it omits referring even
indirectly to the most important biological concept, the molecule that
defines life, the DNA?
Why doesn’t the Qur’an mention anything about animals or
plants that Muhammad couldn’t have known? Why, for example, doesn’t it
mention the marsupials, such as the kangaroos? Could it be
because the marsupials live in faraway continents, like Australia and
South America, and Muhammad knew as much about kangaroos as kangaroos
knew about Muhammad? And it’s not just the marsupials. Why does the
Qur’an fail to refer even indirectly to anything like penguins
(Antarctic, southern hemisphere), turkeys (North American), pumas
(American), iguanas (Pacific), zebras (sub-Saharan), pandas (Chinese),
eucalyptus trees (Australian), watermelons (sub-Saharan), bananas
(Southeast Asian), tomatoes (South American), or potatoes (South
American)? Instead, the Qur’an constantly talks about camels, dates, and
grapes. Didn’t Allah know of any other animals and plants besides those that
Muhammad could see? How “timeless” and “universal” can be a book the
author of which does not give the slightest hint of fauna or flora that
can be found outside of Arabia?
Why doesn’t the Qur’an refer even indirectly to the fact
that living beings on Earth are not just plants and animals? Did you
know that? There are living beings that are neither plants nor animals.
Indeed, there are five “kingdoms” of living beings, of which the
plants are one kingdom, and the animals another one; but there are three
more kingdoms. One of them is the bacteria, mentioned earlier. A fourth
kingdom is the protists, which include such tiny one-cell creatures as
the amoeba and the paramecium, visible only with a microscope. (With the
bare eye, a paramecium on a piece of glass looks like a barely visible
dot, so tiny that you can’t understand it’s a living thing.) And the
fifth kingdom is the fungi, which includes such things as the moulds and
the mushrooms. Certainly Muhammad must have seen some mushrooms, but he
knew so little that he couldn’t understand that the mushrooms are not
plants. (Mushrooms lack chlorophyll, that’s why they’re not green; so
they don’t synthesize nutrients from the sunlight — as plants do — but
receive ready-made nutrients from decomposing organic material.) But
Allah certainly knows that there are other living beings besides plants
and animals on Earth. If the Qur’an was given to Muhammad by Allah, why
does it sound as if Allah knows only about animals and plants?
I could continue like this with more examples, but I don’t want to tire you. The less you know about the biological world, the more you think that the Qur’an is fine in what it says about earthly biology. That’s because the less you know the more your mind is similar to the illiterate Muhammad’s mind, so the more you agree with him. On the contrary, the more you learn about biology, the better you see the gap between the simplistic, childish view of the Qur’an, and the complex reality. The more you know, the more distant your mind becomes from Muhammad’s mind, and the closer it gets to the all-wise Allah’s Mind. Don’t judge the Qur’an as an ignorant, illiterate person. Learn first, see how much there is in this world, see how much is omitted from the Qur’an, see how many miles away the complex reality is from the Qur’anic 10-year-old’s worldview, and only then issue your judgment. If you are ignorant and untrained in science, do me a favor please: simply close your arrogant mouth, open up your mind to scientific knowledge, and start reading and learning about the world and reality.
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